¥Lambda and K are statistical
parameters used in calculating the significance of the gapped alignment score.
They are determined on the basis of the alignment scores of random sequences
using a combination of scoring matrix and gap penalties (Bioinformatics, D. W
Mount, page 251).
¥H is the relative entropy that shows the ability of the
entire substitution matrix to discriminate related from unrelated
sequences.
¥The scoring matrix that was
used
¥The gap creation/gap extension
costs
¥Values for various steps in the search process leading to
the identification of HSPs (High-scoring element
pair).
¥Calculated values for database size, query size, and so on
used in the search.