 Keynote Talk:
SS-1: How old is your fold?
Charlotte M. Deane
Abstracts selected
for Presentation:
Algorithms
SS-2: Statistical
alignment with a sequence evolution model allowing heterogeneous
evolution behaviors along the sequence
Ana Arribas Gil
SS-3: Hybrid
approach based on a combination of methods for operon prediction
C. Hubans1,2, D. Hot2, Y.
Lemoine2,4, E. Mephu-Nguifo3
SS-4: An
Alternative Method for Detecting Conserved Elements in Multiple
Sequence Alignments
Pavol Hanus1, Janis Dingel1,
Joachim Hagenauer1 and Jakob C. Mueller2
Databases
SS-5: Save
a thousand words: Advanced visualisations for Pfam and iPfam
Benjamin Schuster-Böckler,
Robert D. Finn, Alex Bateman
SS-6: High-throughput
computational proteomics - challenges and solutions in the
creation of the Genome Annotating Proteome Pipeline (GAPP)
Ian Shadforth
Gene
Expression
SS-7: Highly
Expressed Proteins Contain Increased Frequency of Alanine
in the Second Amino Acid Position
Age Tats, Maido Remm, Tanel
Tenson
Genes
and Genomes
SS-8: discoveryBASE.
Virtual screening for disease associated proteins
Ronald Rapberger, Martin Haiduk,
Paul Perco, Arno Lukas, Christian Siehs and Bernd Mayer
Phylogenetics
SS-9: Long
branch attraction and topology testing using weighted least-squares
Borys Wrobel
Protein Folding and Function
SS-10: False
occurrences of functional motifs on protein sequences highlight
evolutionary constraints
Allegra Via 1, Federico Gherardini,
Enrico Ferraro, Gianpaolo Scalia Tomba, Gabriele Ausiello
and Manuela Helmer-Citterich
SS-11: Visualization
and clustering of Protein Local Conformational Space using
Geometric Invariant Theory
Ashish V. Tendulkar, Pramod
P. Wangikar
SS-12: Structural
Bioinformatics of Protein-Bound
Water Christopher Bottoms,
Tommi White, John J. Tanner
SS-13: Simple
fold composition and modular architecture of the nuclear
pore complex
Damien Devos, Svetlana Dokudovskaya,
Rosemary Williams, Frank Alber, Narayanan Eswar, Brian T.
Chait, Michael P. Rout, and Andrej Sali
SS-14: REPPER repeats and their periodicities in fibrous proteins
Markus Gruber,Johannes Soding and Andrei N. Lupas
SS-15: A
novel pair-to-pair substitution matrix improves contact
prediction in protein cores
Milana Frenkel-Morgenstern,
Eran Eya, Vladimir Sobolev, Shmuel Pietrokovski
SS-16: Molecular
Recognition and Partner Prediction for Transient Protein
Complexes: CDK-Cyclin Homologue Interactions
Xueping Quan, Peter Doerner,
and Dietlind L.Gerloff
Systems Biology
SS-17: Discovering
regulatory modules from heterogeneous information sources
Karen Lemmens T. De Bie, P.
Monsieurs, K. Engelen, B. De Moor, N. Cristianini, and K.
Marchal
SS-18: A
semi-automated method to study the intersection of metabolic
network and interactome
Joan Planas Iglesias
SS-19: Is
there a relationship between protein connectivity and evolutionary
rate?
Ramazan Saeed
SS-20: BioQSpace:
An interactive visualisation tool for clustering MEDLINE
abstracts
Anna Divoli, Rasmus Winter,
Steve Pettifer& Terri Attwood
Abstracts selected
for Posters:
Algorithms
SS-21: Rigid
Body Protein-Protein Docking Using Biochemical Data
Domantas Motiejunas, Razif
Gabdoulline, Rebecca Wade
SS-22: Guide
structure calculation: a critical step for the accuracy
of progressive multiple sequence alignment algorithms
Laure Vescovo Jean-Christophe
Aude, Geraldine Polaillon
Databases
SS-23: IGD:
A Resssource for Human intronless genes
Amel Louhichi
SS-24: Developing
a knowledge base for PID-expert system
Crina Samarghitean, Jouni
Vliaho, Mauno Vihinen
SS-25: Codon
usage analysis based on web services
Denis Shestakov, Tapio Salakoski,
Mauno Vihinen.
SS-26: VITAMIN:
An Ontology-Driven Information System for Mutant Annotation
Óscar D. Sánchez,
Ana Conesa, José Alberto Maldonado, Montserrat Robles,
Manuel Talón
SS-27: MicrobialTREE:
A user friendly tool for bacterial taxonomy navigation
Pablo Pareja-Tobes, Marina
Manrique, Eduardo Pareja-Tobes, Raquel Tobes y Eduardo Pareja
Genes and Genomes
SS-28: Bioinformatic
sequence identification from sequence family databases
Anne-Muriel Arigon, Guy Perriere
and Manolo Gouy
SS-29: In
silico markovian prediction of variable and constant regions
of lentivirus genomes
Aurélia Boissin-Quillon,
Didier Piau, Caroline Leroux
SS-30: Aligning
intron-exon structures of alternatively spliced genes
Michael Sammeth, Eduardo Eyras
and Roderic Guigo
SS-31: Addressing
Drosophila Gene Duplications: Protein Sequence Redundancy
and Genome Evolution
Carlos Quijano
SS-32: ELEANALYZER:
an automated method for analysis of retrotransposons in
genomes and prediction of their insertion sites
Kamal Rawal, Alok Bhattacharya
Sudha Bhattacharya and Ram Ramaswamy
SS-33: BlastXtract:
a web-based tool for managing and visualizing results from
large translated BLAST and FastA searches
Marcus Claesson
SS-34: Measuring
Selection in RNA molecules
Naila Mimouni, Rune lyngsoe
and Jotun Hein.
SS-35: Prediction
of Heat-Induced Replication Sites in Replication Origins
from Escherichia Coli and Other Plasmidic Replicons
González-Soltero, R.,
Botello, E., and Jiménez-Sánchez, A.
SS-36: In
silico modelling of the PCR process for detection of bacteria
from clinical samples
Triinu Kõressaar, Maido
Remm
SS-37: Understanding
Promoter Logic
Utz J. Pape
Microarrays
SS-38: Accounting for Probe-level Noise in Principal Component Analysis of Microarray Data
Guido Sanguinetti
SS-39: Data-adaptive test statistics for microarray data
Sach Mukherjee
SS-40: GALGO: Software for building statistical models from microarray data
Victor Trevino and Francesco Falciani
Phylogenetics
SS-41: Exploring
the evolution and the diversity of bacterial genes
Zara Ghazoui
SS-42: Biological/Chemical/
and Physical behavioral analyses for Protein Classifications
Rauf Ahmed Shams Malick, Dr.
Kamran Azim
SS-43: More
than 140 genes have been acquired through horizontal gene
transfer from Bacteria to rumen ciliates
Guanola Ricarda, Neil R. McEwanb,
Johannes H.P. Hacksteinc and Martijn A. Huynena.
SS-44: Bioinformatics
tools to encode and integrate microscopy time-lapse sequences
for drug discovery: Lineage analysis the basis for novel
cell-based assays
Imtiaz A. Khan, Lee Campbell,
Paul J Smith and Rachel J Errington
Protein
Structure and Function
SS-45: The
ANNOTATOR sequence analysis suite
Georg Schneider, Michael Wildpaner,
Florian Leitner, Birgit Eisenhaber, Miklos Kozlovsky, Werner
Kubina, Sebastian Maurer-Stroh, Maria Novatchkova, Alexander
Schleiffer, Sun Tian and Frank Eisenhaber
SS-46: Sequence
and Structural Analysis of Extracellular Matrix and Cell
Adhesion Molecules
Hosil Park, Terri Attwood,
Lydia Tabernero, and Jordi Bella
SS-47: FILTREST3D:
program for discrimination of protein structure models that
match the restraints from experimental data
Michal J. Gajda, Marta Kaczor,
Anastasia Bakulina, Janusz M. Bujnicki
SS-48: Computational
approach for understanding substrate specificity of nonribosomal
peptide synthetases
Mohd. Zeeshan Ansari, Rajesh
S. Gokhale and Debasisa Mohanty
SS-49: Discovery
of Protein Substructures in EM Maps
Keren Lasker, Oranit Dror,
Ruth Nussinov, Haim J.Wolfson
SS-50: Amino
Acid Dependent Weighting Factors for FFT-based Unbound Protein
Docking
Philipp Heuser, Dietmar Schomburg
SS-51: Molecular
Modelling and Dynamics of Membrane Proteins
Shiva Amiri
SS-52: B7
and CD28 family immunoglobulins structure-function analysis
Xiaoxia Ge
SS-53: Amino-Acid
Substitutions In Membrane Proteins: Applications To Homology
Recognition And Comparative Modelling
Younes MOKRAB and Kenji MIZUGUCHI
SNPs
SS-54: Prediction
of the insurgence of human genetic diseases due to single
point protein mutation
Calabrese Remo, Capriotti
Emidio, Fariselli Piero and Casadio Rita
Systems
Biology
SS-55: How
system biology can improve the production of L-carnitine
using Escherichia coli?
Angel Sevilla Camins
Text Mining
SS-56: Natural Language Processing and Information Retrieval Techniques Applied to the Reproductive Biology Literature
R. Farhan, J. D. Aplin, T. K. Attwood, M. McGee Wood and C. P. Sibley
University of Manchester, UK |
